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Accelerated molecular dynamics force evaluation on graphics processing units for thermal conductivity calculations

机译:加速分子动力学评估图形处理   用于热导率计算的单位

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摘要

In this paper, we develop a highly efficient molecular dynamics code fullyimplemented on graphics processing units for thermal conductivity calculationsusing the Green-Kubo formula. We compare two different schemes for forceevaluation, a previously used thread-scheme where a single thread is used forone particle and each thread calculates the total force for the correspondingparticle, and a new block-scheme where a whole block is used for one particleand each thread in the block calculates one or several pair forces between theparticle associated with the given block and its neighbor particle(s)associated with the given thread. For both schemes, two different classicalpotentials, namely, the Lennard-Jones potential and the rigid-ion potential areimplemented. While the thread-scheme performs a little better for relativelylarge systems, the block-scheme performs much better for relatively smallsystems. The relative performance of the block-scheme over the thread-schemealso increases with the increasing of the cutoff radius. We validate theimplementation by calculating lattice thermal conductivities of solid argon andlead telluride.
机译:在本文中,我们开发了一种高效的分子动力学代码,该代码完全在图形处理单元上实现,用于使用Green-Kubo公式计算热导率。我们比较了两种不同的力评估方案:以前使用的线程方案,其中一个线程用于一个粒子,每个线程计算相应粒子的总力;以及一个新的块方案,其中将整个块用于一个粒子,每个线程块中的“ n”计算与给定块关联的粒子与其与给定线程关联的相邻粒子之间的一对或几对力。对于这两种方案,都实现了两种不同的经典电位,即Lennard-Jones电位和刚性离子电位。尽管线程方案在相对较大的系统中性能要好一些,而块方案在相对较小的系统中性能要好得多。块方案相对于线程方案的相对性能也随着截止半径的增加而增加。我们通过计算固体氩和碲化铅的晶格热导率来验证该实现。

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